How to use Jupyter Notebook with AWS and Docker
Posted by Superadmin on November 10 2018 02:15:37

How to use Jupyter Notebook with AWS and Docker

This is a step by step tutorial, to used Jupyter Notebook on AWS

If you do not have an account at AWS, create a free account here.

We will proceed as follow

PART 1: Set up a key pair

Step 1) Go to Services and find EC2

Step 2) In the panel and click on Key Pairs

Step 3) Click Create Key Pair

  1. You can call it Docker key
  2. Click Create

A file name Docker_key.pem downloads.

Step 4) Copy and paste it into the folder key. We will need it soon.

For Mac OS user only

This step concerns only Mac OS user. For Windows or Linux users, please proceed to PART 2

You need to set a working directory that will contain the file key

First of all, create a folder named key. For us, it is located inside the main folder Docker. Then, you set this path as your working directory

mkdir Docker/key
cd Docker/key

PART 2: Set up a security group

Step 1) You need to configure a security group. You can access it with the panel

Step 2) Click on Create Security Group

Step 3) In the next Screen

  1. Enter Security group name "jupyter_docker" and Description Security Group for Docker
  2. You need to add 4 rules on top of
  1. Click Create

Step 4) The newly created Security Group will be listed

Part 3: Launch instance

You are finally ready to create the instance

Step 1) Click on Launch Instance

The default server is enough for your need. You can choose Amazon Linux AMI. The current instance is 2018.03.0. 

AMI stands for Amazon Machine Image. It contains the information required to successfully starts an instance that run on a virtual server stored in the cloud.

Note that AWS has a server dedicated to deep learning such as:

All of them Comes with latest binaries of deep learning frameworks pre-installed in separate virtual environments:

Fully-configured with NVidia CUDA, cuDNN and NCCL as well as Intel MKL-DNN

Step 2) Choose t2.micro. It is a free tier server. AWS offers for free this virtual machine equipped with 1 vCPU and 1 GB of memory. This server provides a good tradeoff between computation, memory and network performance. It fits for small and medium database

Step 3) Keep settings default in next screen and click Next: Add Storage

Step 4) Increase storage to 10GB and click Next

Step 5) Keep settings default and click Next: Configure Security Group

Step 6) Choose the security group you created before, which is jupyter_docker

Step 7) Review your settings and Click the launch button

Step 8 ) The last step is to link the key pair to the instance.

Step 8) Instance will launch

Step 9) Below a summary of the instances currently in use. Note the public IP

Step 9) Click on Connect

You will find the connection detials

Launch your instance (Mac OS users)

At first make sure that inside the terminal, your working directory points to the folder with the key pair file docker

run the code

chmod 400 docker.pem

Open the connection with this code.

There are two codes. in some case, the first code avoids Jupyter to open the notebook.

In this case, use the second one to force the connection.

# If able to launch Jupyter
ssh -i "docker.pem" ec2-user@ec2-18-219-192-34.us-east-2.compute.amazonaws.com

# If not able to launch Jupyter
ssh -i "docker.pem" ec2-user@ec2-18-219-192-34.us-east-2.compute.amazonaws.com -L 8888:127.0.0.1:8888

The first time, you are prompted to accept the connection

Launch your instance (Windows users)

Step 1) Go to this website to download PuTTY and PuTTYgen PuTTY

You need to download

Now that both software are installed, you need to convert the .pem file to .ppk. PuTTY can only read .ppk. The pem file contains the unique key created by AWS.

Step 2) Open PuTTYgen and click on Load. Browse the folder where the .pem file is located.

Step 3)After you loaded the file, you should get a notice informing you that the key has been successfully imported. Click on OK

Step 4) Then click on Save private key. You are asked if you want to save this key without a passphrase. Click on yes.

Step 5) Save the Key

Step 6) Go to AWS and copy the public DNS

Open PuTTY and paste the Public DNS in the Host Name

Step 7)

  1. On the left panel, unfold SSH and open Auth
  2. Browse the Private Key. You should select the .ppk
  3. Click on Open.

Step 8)

When this step is done, a new window will be opened. Click Yes if you see this pop-up

Step 9)

You need to login as: ec2-user

Step 10)

You are connected to the Amazon Linux AMI.

Part 4: Install Docker

While you are connected with the server via Putty/Terminal, you can install Docker container.

Execute the following codes

sudo yum update -y
sudo yum install -y docker
sudo service docker start
sudo user-mod -a -G docker ec2-user
exit

Launch again the connection

ssh -i "docker.pem" ec2-user@ec2-18-219-192-34.us-east-2.compute.amazonaws.com -L 8888:127.0.0.1:8888

Windows users use SSH as mentioned above

Part 5: Install Jupyter

Step 1) Create Jupyter with a pre-built image

## Tensorflow
docker run -v ~/work:/home/jovyan/work -d -p 8888:8888 jupyter/tensorflow-notebook 
## Sparkdocker
run -v ~/work:/home/jovyan/work -d -p 8888:8888 jupyter/pyspark-notebook

Code Explanation

For other pre-build images, go here

Allow preserving Jupyter notebook

sudo chown 1000 ~/work

Step 2) Install tree to see our working directory next

sudo yum install -y tree

Step 3)

  1. Check the container and its name (changes with every installation) Use command 
    docker ps
  2. Get the name and use the log to open Jupyter. In the tutorial, the container's name is vigilant_easley. Use command 
    docker logs vigilant_easley
  3. Get the URL

Step 4)

In the URL

http://(90a3c09282d6 or 127.0.0.1):8888/?token=f460f1e79ab74c382b19f90fe3fd55f9f99c5222365eceed

Replace (90a3c09282d6 or 127.0.0.1) with Public DNS of your instance

Step 5)

The new URL becomes

http://ec2-174-129-135-16.compute-1.amazonaws.com:8888/?token=f460f1e79ab74c382b19f90fe3fd55f9f99c5222365eceed 

Step 6) Copy and paste the URL into your browser. Jupyter Opens

Step 7)

You can write a new Notebook in the work folder

Part 6: Close connection

Close the connection in the terminal

exit

Go back to AWS and stop the server.

Troubleshooting

If ever docker doesnot work, try to rebuilt image using

docker run -v ~/work:/home/jovyan/work -d -p 8888:8888 jupyter/tensorflow-notebook